Introduction | Data import | Import data directly from Movebank | Import data downloaded from Movebank | Import non-Movebank data | Import movement objects of other packages | Handling multiple animals | Handling duplicated timestamps | Extracting information from Move* objects | Information only contained in a MoveStack object | Selecting specific individuals from a MoveStack object | Deleting specific individuals from a MoveStack object | Subsetting a Move* object | Time zone and projection | Plotting | Extracting temporal and spatial information of tracks | Bursting a track | Corridor behavior | Dynamic Brownian Bridge Movement Model (dBBMM) | Utilization distribution (UD) | Calculating a dBBMM from a MoveBurst | Issues when calculating the dBBMM | Calculation takes very long | Error: extent is not large enough or resulting UD is one "big blob" | Earth mover's distance (EMD) | Interpolating a trajectory | Thinning a trajectory by time or distance | Thinning a trajectory to a given time lag between locations | Thinning a trajectory to a given traveled distance between locations | Storing, loading and exporting Move* objects
Package: move 4.2.7
move: Visualizing and Analyzing Animal Track Data
Contains functions to access movement data stored in 'movebank.org' as well as tools to visualize and statistically analyze animal movement data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement ecology questions.
Authors:
move_4.2.7.tar.gz
move_4.2.7.zip(r-4.7)move_4.2.7.zip(r-4.6)move_4.2.7.zip(r-4.5)
move_4.2.7.tgz(r-4.6-x86_64)move_4.2.7.tgz(r-4.6-arm64)move_4.2.7.tgz(r-4.5-x86_64)move_4.2.7.tgz(r-4.5-arm64)
move_4.2.7.tar.gz(r-4.7-arm64)move_4.2.7.tar.gz(r-4.7-x86_64)move_4.2.7.tar.gz(r-4.6-arm64)move_4.2.7.tar.gz(r-4.6-x86_64)
move_4.2.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
move/json (API)
| # Install 'move' in R: |
| install.packages('move', repos = c('https://bart1.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://gitlab.com/bartk/move
Pkgdown/docs site:https://bartk.gitlab.io
Datasets:
- dbbmmstack - Dynamic brownian bridges
- duplicatedDataExample - Tracking data example with duplicated timestamps
- fishers - A MoveStack
- leroy - GPS track data from a fisher
- leroydbbmm - Dynamic brownian bridges
- leroydbgb - Dynamic Bivariate Gausian Bridge example object
Last updated from:b44e35c99a. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 328 | ||
| linux-devel-x86_64 | OK | 289 | ||
| source / vignettes | OK | 322 | ||
| linux-release-arm64 | OK | 316 | ||
| linux-release-x86_64 | OK | 337 | ||
| macos-release-arm64 | OK | 230 | ||
| macos-release-x86_64 | OK | 404 | ||
| macos-oldrel-arm64 | OK | 237 | ||
| macos-oldrel-x86_64 | OK | 656 | ||
| windows-devel | OK | 353 | ||
| windows-release | OK | 358 | ||
| windows-oldrel | OK | 320 | ||
| wasm-release | OK | 186 |
Exports:anglebrownian.bridge.dynbrownian.motion.variance.dynburstburstIdburstId<-citationscitations<-contourcorridordistancedynBGBdynBGBvarianceemdequalProjgetDataRepositoryDatagetDuplicatedTimestampsgetMotionVariancegetMovebankgetMovebankAnimalsgetMovebankDatagetMovebankIDgetMovebankLocationDatagetMovebankNonLocationDatagetMovebankReferenceTablegetMovebankSensorsgetMovebankSensorsAttributesgetMovebankStudiesgetMovebankStudygetVolumeUDhrBootstrapidDataidData<-interpolateTimelicenseTermslicenseTerms<-linesmovemove2ademovebankLoginmoveStackn.indivn.locsnamesIndivouterProbabilityplotplotBurstspointsraster2contoursearchMovebankStudiesseglengthsensorshowspeedsplitsummarythinDistanceAlongTrackthinTrackTimetimeLagtimestampstimestamps<-trackIdturnAngleGcUDStackunUsedRecordsunUsedRecords<-
Dependencies:askpasscachemclicurlfastmapgeospherehttrjsonlitelatticememoisemimeopensslR6rasterRcpprlangspsysterraxml2
Using the move package
Last update: 2024-06-25
Started: 2020-03-10
Browsing Movebank within R
Introduction | Login to Movebank | Search for a study name and MovebankID | Search for a study name with keywords | Get the Movebank ID of a study | Get information about the study, tags, animals and deployments | Get general information of a study | Get information about sensors | Get information about the animals of a study | Get all reference data of a study | Download the location data of a study as a 'move/moveStack' object | Download location data of a study | Download location data for selected individuals of a study | Download location data for a selected time range | Dealing with duplicated timestamps | Downloading a study with many locations | Download location data of a study as a 'data.frame' | Download location data including locations marked as outliers in Movebank | Download non-location data of a study as a 'data.frame' | Download non-location data of a study | Download non-location data for a selected time range | Download non-location data with the 'getMovebankData' function | Downloading a study with a lot of data | Download data from the Movebank Data Repository as a 'move/moveStack' object
Last update: 2022-11-13
Started: 2020-03-10
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| An overview of the functions in this package | move-package |
| The UD class | .UD .UD-class .UDBurstStack-class .UDStack-class UDStack-class |
| The .unUsedRecords and .unUsedRecordsStack class | .unUsedRecords-class .unUsedRecordsStack-class |
| Headings of the segments of a movement track | angle angle,.MoveTrackSingle-method angle,.MoveTrackStack-method |
| Returns a Data Frame | as.data.frame as.data.frame,.unUsedRecords-method as.data.frame,.unUsedRecordsStack-method as.data.frame,dBMvariance-method as.data.frame,Move-method as.data.frame,MoveBurst-method as.data.frame,MoveStack-method |
| Calculates a dynamic Brownian Bridge | brownian.bridge.dyn brownian.bridge.dyn,.MoveTrackSingle,missing,missing,numeric-method brownian.bridge.dyn,.MoveTrackSingle,RasterLayer,missing,numeric-method brownian.bridge.dyn,ANY,RasterLayer,missing,character-method brownian.bridge.dyn,dBMvariance,RasterLayer,missing,numeric-method brownian.bridge.dyn,dBMvarianceBurst,RasterLayer,missing,numeric-method brownian.bridge.dyn,dBMvarianceStack,RasterLayer,missing,numeric-method brownian.bridge.dyn,MoveStack,RasterLayer,missing,numeric-method brownian.bridge.dyn,SpatialPointsDataFrame,missing,numeric,ANY-method brownian.bridge.dyn,SpatialPointsDataFrame,numeric,missing,ANY-method |
| Calculates the dynamic brownian motion variance | brownian.motion.variance.dyn brownian.motion.variance.dyn,.MoveTrackSingle,numeric,numeric,numeric-method brownian.motion.variance.dyn,.MoveTrackSingleBurst,numeric,numeric,numeric-method brownian.motion.variance.dyn,MoveStack,numeric,numeric,numeric-method |
| Bursting a track | burst burst,.MoveTrackSingleBurst,factor-method burst,.MoveTrackSingleBurst,missing-method burst,ANY,character-method burst,ANY,numeric-method burst,Move,factor-method |
| Returns or sets the burstId | burstId burstId,.MoveTrackSingleBurst-method burstId,MoveBurst-method burstId<- burstId<-,.MoveTrackSingleBurst,character-method burstId<-,.MoveTrackSingleBurst,factor-method |
| Extract the citation of a Move or MoveStack object | citations citations,.MoveGeneral-method citations<- citations<-,.MoveGeneral-method |
| Contour plot | contour contour,.UD-method contour,.UDStack-method |
| Extract the track coordinates from a Move or MoveStack object | coordinates coordinates,Move-method |
| Corridor behavior identification | corridor corridor,.MoveTrackSingle-method corridor,.MoveTrackStack-method |
| The DBBMM class | DBBMM DBBMM-class |
| The DBBMMBurstStack class | DBBMMBurstStack DBBMMBurstStack-class |
| The DBBMMStack class | DBBMMStack DBBMMStack-class |
| The dynBGBvariance class | dBGBvariance-class dBGBvarianceTmp-class |
| The dBMvariance class | dBMvariance-class dBMvarianceBurst-class dBMvarianceStack-class dBMvarianceTmp-class |
| Distance between the locations of a movement track | distance distance,.MoveTrackSingle,missing-method distance,.MoveTrackStack,missing-method |
| Tracking data example with duplicated timestamps | duplicatedDataExample |
| Calculation of the dynamic Bivariate Gausian Bridge | dynBGB dynBGB,.MoveTrackSingle,ANY,character-method dynBGB,.MoveTrackSingle,missing,ANY-method dynBGB,.MoveTrackSingle,numeric,ANY-method dynBGB,.MoveTrackSingle,RasterLayer,numeric-method dynBGB,dBGBvariance,RasterLayer,numeric-method |
| The dynBGB class | dynBGB-class |
| Calculates the Bivariate Gaussian Bridge motion variance | dynBGBvariance dynBGBvariance,.MoveTrackSingle,numeric,numeric,numeric-method |
| Earth movers distance | emd emd,RasterLayer,RasterLayer-method emd,RasterStackBrick,missing-method emd,RasterStackBrick,RasterStackBrick-method emd,SpatialPoints,SpatialPoints-method |
| Checks projections for being equal | equalProj equalProj,list-method |
| A MoveStack | fishers |
| Download data from the Movebank Data Repository | getDataRepositoryData getDataRepositoryData,character-method |
| Identifies duplicated timestamps | getDuplicatedTimestamps getDuplicatedTimestamps,character-method getDuplicatedTimestamps,connection-method getDuplicatedTimestamps,data.frame-method getDuplicatedTimestamps,factor-method |
| Extracts the estimated motion variance | getMotionVariance getMotionVariance,DBBMM-method getMotionVariance,DBBMMBurstStack-method getMotionVariance,DBBMMStack-method getMotionVariance,dBGBvarianceTmp-method getMotionVariance,dBMvarianceBurst-method getMotionVariance,dBMvarianceStack-method getMotionVariance,dBMvarianceTmp-method getMotionVariance,dynBGB-method |
| Download Data from Movebank | getMovebank getMovebank,character,missing-method getMovebank,character,MovebankLogin-method |
| Animals, tags and IDs in a Movebank study | getMovebankAnimals getMovebankAnimals,ANY,missing-method getMovebankAnimals,ANY,MovebankLogin-method getMovebankAnimals,character,MovebankLogin-method getMovebankAnimals,numeric,MovebankLogin-method |
| Download data from Movebank as a Move object | getMovebankData getMovebankData,ANY,ANY,missing-method getMovebankData,ANY,ANY,MovebankLogin-method getMovebankData,ANY,missing,missing-method getMovebankData,character,ANY,MovebankLogin-method getMovebankData,numeric,character,MovebankLogin-method getMovebankData,numeric,missing,MovebankLogin-method getMovebankData,numeric,numeric,MovebankLogin-method |
| Movebank Study ID | getMovebankID getMovebankID,character,missing-method getMovebankID,character,MovebankLogin-method |
| Download location data from Movebank as a table | getMovebankLocationData getMovebankLocationData,ANY,ANY,ANY,missing-method getMovebankLocationData,ANY,ANY,missing,missing-method getMovebankLocationData,ANY,missing,missing,missing-method getMovebankLocationData,character,ANY,ANY,MovebankLogin-method getMovebankLocationData,numeric,character,ANY,MovebankLogin-method getMovebankLocationData,numeric,missing,ANY,MovebankLogin-method getMovebankLocationData,numeric,numeric,character,MovebankLogin-method getMovebankLocationData,numeric,numeric,missing,MovebankLogin-method getMovebankLocationData,numeric,numeric,numeric,MovebankLogin-method |
| Download non-location data from Movebank | getMovebankNonLocationData getMovebankNonLocationData,ANY,ANY,ANY,missing-method getMovebankNonLocationData,ANY,ANY,missing,missing-method getMovebankNonLocationData,ANY,missing,missing,missing-method getMovebankNonLocationData,character,ANY,ANY,MovebankLogin-method getMovebankNonLocationData,numeric,character,ANY,MovebankLogin-method getMovebankNonLocationData,numeric,missing,ANY,MovebankLogin-method getMovebankNonLocationData,numeric,numeric,character,MovebankLogin-method getMovebankNonLocationData,numeric,numeric,missing,MovebankLogin-method getMovebankNonLocationData,numeric,numeric,numeric,MovebankLogin-method |
| Download all reference data of a Movebank study | getMovebankReferenceTable getMovebankReferenceTable,ANY,missing-method getMovebankReferenceTable,ANY,MovebankLogin-method getMovebankReferenceTable,character,MovebankLogin-method getMovebankReferenceTable,numeric,MovebankLogin-method |
| Information about Movebank sensors | getMovebankSensors getMovebankSensors,ANY,missing-method getMovebankSensors,ANY,MovebankLogin-method getMovebankSensors,character,MovebankLogin-method getMovebankSensors,missing,missing-method getMovebankSensors,missing,MovebankLogin-method getMovebankSensors,numeric,MovebankLogin-method |
| Available attributes of Movebank sensors | getMovebankSensorsAttributes getMovebankSensorsAttributes,ANY,missing-method getMovebankSensorsAttributes,character,MovebankLogin-method getMovebankSensorsAttributes,numeric,MovebankLogin-method |
| All studies on Movebank | getMovebankStudies getMovebankStudies,missing-method getMovebankStudies,MovebankLogin-method |
| Returns information of a Movebank study | getMovebankStudy getMovebankStudy,ANY,missing-method getMovebankStudy,ANY,MovebankLogin-method getMovebankStudy,character,MovebankLogin-method getMovebankStudy,numeric,MovebankLogin-method |
| Utilization distribution (UD) | getVolumeUD getVolumeUD,.UD-method getVolumeUD,.UDStack-method |
| Calculates and plots the area of the Minimum Convex Polygon of a track | hrBootstrap hrBootstrap,.MoveTrackStack-method hrBootstrap,SpatialPoints-method |
| Obtain or replace the idData slot of a Move object | idData idData,.MoveTrack-method idData<- idData<-,.MoveTrack,ANY,ANY,ANY-method idData<-,.MoveTrack,missing,missing,data.frame-method |
| Interpolate a trajectory | interpolateTime interpolateTime,.MoveTrackSingle,difftime-method interpolateTime,.MoveTrackSingle,numeric-method interpolateTime,.MoveTrackSingle,POSIXct-method |
| GPS track data from a fisher | leroy |
| dynamic Bivariate Gausian Bridge example object | leroydbgb |
| Extract the license terms of a Move or MoveStack object | licenseTerms licenseTerms,.MoveGeneral-method licenseTerms<- licenseTerms<-,.MoveGeneral-method |
| Plotting the lines of a track | lines lines,.MoveTrackSingle-method lines,.MoveTrackSingleBurst-method lines,.MoveTrackStack-method |
| Create a Move object | move move,binClstPath,missing,missing,missing,missing-method move,binClstStck,missing,missing,missing,missing-method move,character,missing,missing,missing,missing-method move,connection,missing,missing,missing,missing-method move,data.frame,missing,missing,missing,missing-method move,list,missing,missing,missing,missing-method move,ltraj,missing,missing,missing,missing-method move,numeric,numeric,POSIXct,data.frame,character-method move,numeric,numeric,POSIXct,data.frame,CRS-method move,numeric,numeric,POSIXct,data.frame,missing-method move,numeric,numeric,POSIXct,missing,ANY-method move,telemetry,missing,missing,missing,missing-method move,track,missing,missing,missing,missing-method move,track_xyt,missing,missing,missing,missing-method |
| The Move class | .MoveGeneral-class .MoveTrack .MoveTrack-class .MoveTrackSingle .MoveTrackSingle-class Move-class |
| Convert a Move or MoveStack object to a SpatialPointsDataFrame | move2ade move2ade,.MoveTrackSingle-method move2ade,.MoveTrackStack-method |
| Login into Movebank | movebankLogin movebankLogin,character,character-method movebankLogin,character,missing-method movebankLogin,missing,character-method movebankLogin,missing,missing-method |
| The MovebankLogin class | MovebankLogin MovebankLogin-class |
| MoveBurst class | .MoveTrackSingleBurst-class MoveBurst-class |
| Creating a MoveStack | moveStack moveStack,list-method moveStack,Move-method moveStack,MoveStack-method |
| The MoveStack class | .MoveTrackStack-class MoveStack MoveStack-class [,MoveStack,ANY,ANY-class |
| Extract the number of individuals of a MoveStack | n.indiv n.indiv,.MoveTrackStack-method n.indiv,Move-method |
| Extract the number of locations of a Move or MoveStack object | n.locs n.locs,.MoveTrackStack-method n.locs,SpatialPointsDataFrame-method |
| Extract the names of the individuals of a move or moveStack object | namesIndiv namesIndiv,.MoveTrackSingle-method namesIndiv,.MoveTrackStack-method |
| Calculates the probabilities at the edges of a raster | outerProbability outerProbability,DBBMMStack-method outerProbability,RasterLayer-method |
| Plotting track or raster | plot plot,.MoveTrackSingle,missing-method plot,.MoveTrackSingleBurst,missing-method plot,.MoveTrackStack,missing-method |
| Plotting the centroids of a bursted track | plotBursts plotBursts,.MoveTrackSingleBurst-method plotBursts,list-method |
| Plotting the points of a track | points points,.MoveTrackSingle-method points,.MoveTrackSingleBurst-method points,.MoveTrackStack-method |
| Extract raster topology from DBBMM or dynBGB | raster raster,DBBMM-method raster,DBBMMStack-method |
| Convert raster to contour lines | raster2contour raster2contour,.UD-method raster2contour,.UDStack-method |
| Search for a study on Movebank | searchMovebankStudies searchMovebankStudies,character,missing-method searchMovebankStudies,character,MovebankLogin-method |
| Segment lengths of a track | seglength seglength,SpatialPointsDataFrame-method |
| Extract the sensor of a Move unUsedRecords object | sensor sensor,.MoveTrack-method sensor,.unUsedRecords-method |
| Show a Move, DBBMM, dynBGB object | show show,.MoveGeneral-method show,.MoveTrack-method show,.MoveTrackSingle-method show,.MoveTrackSingleBurst-method show,.MoveTrackStack-method show,.unUsedRecords-method show,dBMvariance-method show,dBMvarianceTmp-method show,Move-method show,MoveBurst-method show,MoveStack-method |
| Speed between the locations of a movement track | speed speed,.MoveTrackSingle-method speed,.MoveTrackStack-method |
| Splitting a MoveStack, MoveBurst or DBBMMStack | split split,.MoveTrackSingleBurst,missing-method split,.MoveTrackStack,missing-method split,.UDStack,missing-method split,DBBMMStack,missing-method split,MoveStack,missing-method |
| Transform projection of movement track | spTransform spTransform,Move,character-method spTransform,Move,missing-method |
| Subset movement tracks | [,.MoveTrack,ANY,ANY-method [,.MoveTrackSingleBurst,ANY,ANY-method [,.MoveTrackStack,ANY,ANY-method [,.unUsedRecords,ANY,ANY-method [,.unUsedRecordsStack,ANY,ANY-method [,dBGBvariance,ANY,ANY-method [,dBMvariance,ANY,ANY-method [,dBMvarianceBurst,ANY,ANY-method [,dBMvarianceStack,ANY,ANY-method [,MoveStack,ANY,ANY-method [<-,.MoveTrack,ANY,ANY-method [[,.MoveTrackStack,character,missing-method [[,.MoveTrackStack,logical,missing-method [[,.MoveTrackStack,numeric,missing-method [[,MoveStack,character,missing-method |
| Summary of Move, DBBMM, dynBGB objects | summary summary,.UD-method summary,.UDStack-method |
| Thinning trajectories to a specific time interval or distance. | thinDistanceAlongTrack thinDistanceAlongTrack,.MoveTrackSingle-method thinTrackTime thinTrackTime,.MoveTrackSingle-method |
| Time lags between the locations of a movement track | timeLag timeLag,.MoveTrackSingle-method timeLag,.MoveTrackStack-method |
| Extract or set the timestamps of a Move or MoveStack object | timestamps timestamps,.MoveTrack-method timestamps,.MoveTrackSingle-method timestamps,.unUsedRecords-method timestamps<- timestamps<-,.MoveTrack-method |
| Returns trackId | trackId trackId,.MoveTrackStack-method trackId,.unUsedRecordsStack-method trackId,MoveStack-method |
| Turning angles on great circle tracks | turnAngleGc turnAngleGc,.MoveTrackSingle-method turnAngleGc,.MoveTrackStack-method |
| Creating UDStack objects | UDStack UDStack,.UDBurstStack-method UDStack,list-method UDStack,RasterBrick-method UDStack,RasterStack-method |
| Extracts or creates the unUsedRecords | unUsedRecords unUsedRecords,.unUsedRecords-method unUsedRecords,.unUsedRecordsStack-method unUsedRecords<- unUsedRecords<-,.MoveTrackSingle,logical-method unUsedRecords<-,.MoveTrackStack,logical-method |
| Dynamic brownian bridges | dbbmmstack leroydbbmm |
